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Targeting Cancer Safely
Targeting Cancer Safely

Combining Homology Searches and Structural Tools to Pinpoint ROR1 Domains for Precise Antibody Design

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TYPE OF SUPPORT

Research Background

Aggressive cancers such as triple‑negative breast cancer urgently need more precise and less toxic treatment options. One promising strategy is to target proteins that appear on the surface of tumour cells but are largely absent from healthy tissues. 


ROR1 is one such emerging target in cancer immunotherapy, yet many existing antibodies bind to regions of the protein that resemble normal human proteins, raising concerns about off‑target effects. 


By combining laboratory research with computational analysis, the team from The University of Queensland, led by Associate Professor Fernando Guimaraes, set out to identify the most distinctive and safest regions of ROR1 to guide the development of next‑generation antibody‑based therapies.

QCIF Role

Dr Magdalena Antczak used BLAST searches and AlphaFold structural modelling to examine how the Ig‑like domain of ROR1 compares to other human proteins. Their analysis showed that this region shares strong similarity with several normally expressed proteins, including VEGFR2, which displayed high structural overlap. These insights highlighted the value of focusing antibody development on the more distinctive Fz and Kr regions of ROR1. 


This approach supported the creation of antibody fragments designed to better distinguish cancer cells from healthy tissue.

Research Outcome & Impact

The project led to the development of a new antibody that recognises a unique part of the ROR1 protein, enabling immune cells to better identify and attack cancer cells while sparing healthy tissue. When paired with engineered “super” natural killer (NK) cells - immune cells upgraded to resist the tumour‑suppressing signal TGF‑β - the antibody significantly improved tumour control in laboratory and animal models. 


This combined approach has the potential to shrink hard‑to‑treat tumours with fewer side effects, opening the door to future clinical trials and new treatment options for patients who currently have few.


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It was really rewarding to support the team by helping pinpoint the parts of the protein that were truly unique to cancer cells. It’s great to see those insights contribute to a therapy with real potential to help patients.

Dr Magda Antczak, Bioinformatician, QCIF Digital Research

Bioinformatics

Magdalena (Magda) Antczak

Bioinformatician

Collaborating Organisations

University of Queensland; QCIF Digital Research; Mater Research Institute, Peter MacCallum Cancer Centre, Olivia Newton-John Cancer Research Institute,
Pontifical Catholic University of Paraná, Curitiba Campus.

Researchers & COLLABORATORS
Team behind the project
Bioinformatics
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