QFAB provided bioinformatics expertise and computational resources to a UQ group that published a ground-breaking paper in Nature Biotechnology last month.
Bacterial classification has been given a complete makeover by the UQ research team, using an evolutionary tree based on genome sequences.
The study, led by Professor Philip Hugenholtz from UQ’s School of Chemistry and Molecular Biosciences and the Australian Centre for Ecogenomics, relied on a technique called metagenomics, where bacterial genomes are obtained straight from environmental samples, to create a more complete picture of the structure (known scientifically as taxonomy) of the bacterial kingdom.
One of the paper’s authors, Pierre Chaumeil, initially worked on the project as an embedded QFAB bioinformatician in the Hugenholtz team to develop some of the project’s analysis pipelines. Pierre then joined the Hugenholtz team full-time.
QFAB also provided the project with computational resources, including its large-memory virtual machine.
Read more about the Hugenholtz team’s research in UQ News.
Please contact the QFAB team to discuss your analysis requirements.
14 March 2019, webinar
Read more ...21–25 October 2019, Brisbane
Read more ...19–20 March 2019, UQ St Lucia
Read more ...1 March 2019, online & nationwide
Read more ...QCIF is seeking a small number of users to trial a new QRIScloud service that enables researchers to access their QRISdata collections using an object storage interface.
Read more ...Daniel Baird has joined the QCIF team as a James Cook University-based eResearch Analyst.
Read more ...QCIF kicked off its Software Carpentry workshops for the year with a Python session at QUT on 20–21 February.
Read more ...Professor Matt Bellgard, QUT’s inaugural eResearch Director, has joined QCIF’s board of directors.
Read more ...Providing travellers with real-time information on traffic conditions and congestion in the South East Queensland area.
Read more ...The interactive 3D visualisation shows how the greenhouse gas is generated in the dam's sedement zone. It allows non-technical stakeholders to make better informed decisions about methane management.
Read more ...Helping the UQ Molecular Dynamics group to improve the capacity of their software to handle at least 100 molecules at a time, up from 20, QCIF has enabled the group to continue its disease research at the cutting edge.
Read more ...The Tropical Data Hub (TDH) is a JCU developed centralised data store making it easier for researchers to manage data related to the tropics. An open portal, it facilitates a multi-disciplinary approach to issues around climate change and conservation.
Read more ...There's an important distinction between climate change and climate change adaptation. Research into climate change looks at questions of how the climate is changing and how this change will affect the environment. Climate change adaptation looks at how we can respond to these changes – how we can reduce the impacts of stresses on human and natural systems including our cities and regions, our agriculture and aquaculture, and the biodiversity of our environment, and how we can harness any beneficial opportunities. In other words, what should we do to prepare and adapt?
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